iteRates: An R package for implementing a parametric rate comparison on phylogenetic trees
Evolutionary Bioinformatics, ISSN: 1176-9343, Vol: 10, Issue: 10, Page: 127-130
2014
- 4Citations
- 142Usage
- 20Captures
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Metrics Details
- Citations4
- Citation Indexes4
- CrossRef4
- Usage142
- Abstract Views76
- Downloads66
- Captures20
- Readers20
- 20
Article Description
Patterns of diversification rate variation detected in phylogenetic hypotheses are frequently used to infer historical, ecological, and evolutionary processes. The parametric rate comparison (PRC) is a method for detecting rate variation in trees that models branch lengths as random variables drawn from familiar statistical distributions. iteRates is a library of functions for the R statistical computing environment for implementing PRC on phylogenetic trees. Here, we describe some of the functions in iteRates for subtree identification, tree manipulation, applying the PRC and K-clades PRC analyses, and conducting a whole-tree randomization test. © the authors, publisher and licensee libertas academica limited.
Bibliographic Details
http://www.scopus.com/inward/record.url?partnerID=HzOxMe3b&scp=84905659095&origin=inward; http://dx.doi.org/10.4137/ebo.s16487; http://www.ncbi.nlm.nih.gov/pubmed/25125968; http://journals.sagepub.com/doi/10.4137/EBO.S16487; http://journals.sagepub.com/doi/pdf/10.4137/EBO.S16487; http://journals.sagepub.com/doi/full-xml/10.4137/EBO.S16487; https://journals.sagepub.com/doi/10.4137/EBO.S16487; https://trace.tennessee.edu/utk_ecolpubs/54; https://trace.tennessee.edu/cgi/viewcontent.cgi?article=1055&context=utk_ecolpubs; https://www.airitilibrary.com/Article/Detail/P20160624003-201412-201606280003-201606280003-127-130; http://www.la-press.com/iterates-an-r-package-for-implementing-a-parametric-rate-comparison-on-article-a4318; http://insights.sagepub.com/iterates-an-r-package-for-implementing-a-parametric-rate-comparison-on-article-a4318; http://trace.tennessee.edu/utk_ecolpubs/54; http://insights.sagepub.com/redirect_file.php?fileId=5769&filename=4318-EBO-iteRates:-An-R-Package-for-Implementing-a-Parametric-Rate-Comparison-o.pdf&fileType=pdf
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