Characteristics of the mosaic genome of a human parechovirus type 1 strain isolated from an infant with pneumonia in China
Infection, Genetics and Evolution, ISSN: 1567-1348, Vol: 29, Page: 91-98
2015
- 10Citations
- 9Captures
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Metrics Details
- Citations10
- Citation Indexes10
- 10
- CrossRef8
- Captures9
- Readers9
Article Description
Human parechoviruses (HPeVs) belong to the Parechovirus genus of the large and growing family of Picornaviridae with a non-enveloped, single-stranded and positive-sense RNA. An HPeV strain was isolated from the nasopharyngeal aspirate specimen of a 2 months old infant hospitalized with pneumonia in Beijing, China and nominated as BJ-37359 followed the code of the specimen. Strain BJ-37359 was identified as HPeV1 by whole genome sequencing. The full genome of strain BJ-37359 consisted of 7336 nucleotides (nt), excluding a poly (A) tail and contained an ORF of 6537 nt flanked by 5′UTR of 709 nt and 3′UTR of 90 nt. Phylogenetic analyses revealed that strain BJ-37359 were clustered together with HPeV1 strains in the structural capsid protein region, while uncoupling in the non-structural gene regions. Analyses with Simplot and Bootscan indicated that multiple recombination events occurred in the non-structural region and VP0 region of strain BJ-37359 with other HPeV1, and other types might have contributed to the recombination, especially HPeV6 and HPeV7 strains. Recombination analyses indicated that strain BJ-37359 may have a mosaic genome with new genomic recombination breakpoints.
Bibliographic Details
http://www.sciencedirect.com/science/article/pii/S1567134814004092; http://dx.doi.org/10.1016/j.meegid.2014.11.006; http://www.scopus.com/inward/record.url?partnerID=HzOxMe3b&scp=84911910903&origin=inward; http://www.ncbi.nlm.nih.gov/pubmed/25461260; https://linkinghub.elsevier.com/retrieve/pii/S1567134814004092; https://dx.doi.org/10.1016/j.meegid.2014.11.006
Elsevier BV
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