PlumX Metrics
Embed PlumX Metrics

Differentiable sampling of molecular geometries with uncertainty-based adversarial attacks

Nature Communications, ISSN: 2041-1723, Vol: 12, Issue: 1, Page: 5104
2021
  • 53
    Citations
  • 0
    Usage
  • 113
    Captures
  • 2
    Mentions
  • 61
    Social Media
Metric Options:   Counts1 Year3 Year

Metrics Details

  • Citations
    53
  • Captures
    113
  • Mentions
    2
    • Blog Mentions
      1
      • 1
    • News Mentions
      1
      • 1
  • Social Media
    61
    • Shares, Likes & Comments
      61
      • Facebook
        61

Most Recent Blog

Using adversarial attacks to refine molecular energy predictions

Neural networks (NNs) are increasingly being used to predict new materials, the rate and yield of chemical reactions, and drug-target interactions, among others. For these applications, they are orders of magnitude faster than traditional methods such as quantum mechanical simulations.  The price for this agility, however, is reliability. Because machine learning models only interpolate, they […]

Most Recent News

Using adversarial attacks to refine molecular energy predictions

Neural networks (NNs) are increasingly being used to predict new materials, the rate and yield of chemical reactions, and drug-target interactions, among others. For these applications, they are orders of magnitude faster than traditional methods such as quantum mechanical simulations.

Article Description

Neural network (NN) interatomic potentials provide fast prediction of potential energy surfaces, closely matching the accuracy of the electronic structure methods used to produce the training data. However, NN predictions are only reliable within well-learned training domains, and show volatile behavior when extrapolating. Uncertainty quantification methods can flag atomic configurations for which prediction confidence is low, but arriving at such uncertain regions requires expensive sampling of the NN phase space, often using atomistic simulations. Here, we exploit automatic differentiation to drive atomistic systems towards high-likelihood, high-uncertainty configurations without the need for molecular dynamics simulations. By performing adversarial attacks on an uncertainty metric, informative geometries that expand the training domain of NNs are sampled. When combined with an active learning loop, this approach bootstraps and improves NN potentials while decreasing the number of calls to the ground truth method. This efficiency is demonstrated on sampling of kinetic barriers, collective variables in molecules, and supramolecular chemistry in zeolite-molecule interactions, and can be extended to any NN potential architecture and materials system.

Bibliographic Details

Schwalbe-Koda, Daniel; Tan, Aik Rui; Gómez-Bombarelli, Rafael

Springer Science and Business Media LLC

Chemistry; Biochemistry, Genetics and Molecular Biology; Physics and Astronomy

Provide Feedback

Have ideas for a new metric? Would you like to see something else here?Let us know