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PhyloJunction: a computational framework for simulating, developing, and teaching evolutionary models

bioRxiv, ISSN: 2692-8205
2023
  • 0
    Citations
  • 0
    Usage
  • 0
    Captures
  • 2
    Mentions
  • 0
    Social Media
Metric Options:   Counts1 Year3 Year

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  • Mentions
    2
    • Blog Mentions
      1
      • Blog
        1
    • News Mentions
      1
      • News
        1

Most Recent Blog

Windtalker

Created with Midjourney v6.0 ALPHA □ Allocator: A graph neural network-based framework for mRNA subcellular localization prediction >> https://www.biorxiv.org/content/10.1101/2023.12.14.571762v1 Allocator is a multi-view parallel deep learning framework that is designed for mRNA multi-localization prediction. Allocator incorporates various network architectures, including multilayer perceptron (ML

Most Recent News

PhyloJunction: a computational framework for simulating, developing, and teaching evolutionary models

2024 JAN 03 (NewsRx) -- By a News Reporter-Staff News Editor at NewsRx Life Science Daily -- According to news reporting based on a preprint

Article Description

We introduce PhyloJunction, a computational framework designed to facilitate the prototyping, testing, and characterization of evolutionary models. PhyloJunction is distributed as an open-source Python library that can be used to implement a variety of models, through its flexible graphical modeling architecture and dedicated model specification language. Model design and use are exposed to users via command-line and graphical interfaces, which integrate the steps of simulating, summarizing, and visualizing data. This paper describes the features of PhyloJunction – which include, but are not limited to, a general implementation of a popular family of phylogenetic diversification models – and, moving forward, how it may be expanded to not only include new models, but to also become a platform for conducting and teaching statistical learning.

Bibliographic Details

Fábio K. Mendes; Michael J. Landis

Cold Spring Harbor Laboratory

Biochemistry, Genetics and Molecular Biology; Agricultural and Biological Sciences; Immunology and Microbiology; Neuroscience; Pharmacology, Toxicology and Pharmaceutics

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