Searching for SNPs with cloud computing
Genome Biology, ISSN: 1474-7596, Vol: 10, Issue: 11, Page: R134
2009
- 387Citations
- 603Captures
- 1Mentions
Metric Options: CountsSelecting the 1-year or 3-year option will change the metrics count to percentiles, illustrating how an article or review compares to other articles or reviews within the selected time period in the same journal. Selecting the 1-year option compares the metrics against other articles/reviews that were also published in the same calendar year. Selecting the 3-year option compares the metrics against other articles/reviews that were also published in the same calendar year plus the two years prior.
Example: if you select the 1-year option for an article published in 2019 and a metric category shows 90%, that means that the article or review is performing better than 90% of the other articles/reviews published in that journal in 2019. If you select the 3-year option for the same article published in 2019 and the metric category shows 90%, that means that the article or review is performing better than 90% of the other articles/reviews published in that journal in 2019, 2018 and 2017.
Citation Benchmarking is provided by Scopus and SciVal and is different from the metrics context provided by PlumX Metrics.
Example: if you select the 1-year option for an article published in 2019 and a metric category shows 90%, that means that the article or review is performing better than 90% of the other articles/reviews published in that journal in 2019. If you select the 3-year option for the same article published in 2019 and the metric category shows 90%, that means that the article or review is performing better than 90% of the other articles/reviews published in that journal in 2019, 2018 and 2017.
Citation Benchmarking is provided by Scopus and SciVal and is different from the metrics context provided by PlumX Metrics.
Metrics Details
- Citations387
- Citation Indexes387
- 387
- CrossRef356
- Captures603
- Readers603
- 596
- Mentions1
- News Mentions1
- 1
Most Recent News
Next-generation sequencing of Coccidioides immitis isolated during cluster investigation
Genotyping of microorganisms typically relies on comparison of genomic features (e.g., fragment size, repeats, single-nucleotide polymorphisms [SNPs]) between strains and/or against a database of feature
Article Description
As DNA sequencing outpaces improvements in computer speed, there is a critical need to accelerate tasks like alignment and SNP calling. Crossbow is a cloud-computing software tool that combines the aligner Bowtie and the SNP caller SOAPsnp. Executing in parallel using Hadoop, Crossbow analyzes data comprising 38-fold coverage of the human genome in three hours using a 320-CPU cluster rented from a cloud computing service for about $85. Crossbow is available from http://bowtie-bio.sourceforge.net/crossbow/.© 2009 Langmead et al; licensee BioMed Central Ltd.
Bibliographic Details
http://www.scopus.com/inward/record.url?partnerID=HzOxMe3b&scp=72849149423&origin=inward; http://dx.doi.org/10.1186/gb-2009-10-11-r134; http://www.ncbi.nlm.nih.gov/pubmed/19930550; https://genomebiology.biomedcentral.com/articles/10.1186/gb-2009-10-11-r134; https://dx.doi.org/10.1186/gb-2009-10-11-r134; http://genomebiology.com/2009/10/11/R134; https://genomebiology.biomedcentral.com/track/pdf/10.1186/gb-2009-10-11-r134; https://genomebiology.biomedcentral.com/counter/pdf/10.1186/gb-2009-10-11-r134; http://genomebiology.biomedcentral.com/articles/10.1186/gb-2009-10-11-r134; http://www.genomebiology.com/2009/10/11/R134; http://europepmc.org/abstract/med/19930550; http://europepmc.org/articles/PMC3091327
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