Automated assembly scaffolding using RagTag elevates a new tomato system for high-throughput genome editing
Genome Biology, ISSN: 1474-760X, Vol: 23, Issue: 1, Page: 258
2022
- 280Citations
- 282Captures
- 1Mentions
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Example: if you select the 1-year option for an article published in 2019 and a metric category shows 90%, that means that the article or review is performing better than 90% of the other articles/reviews published in that journal in 2019. If you select the 3-year option for the same article published in 2019 and the metric category shows 90%, that means that the article or review is performing better than 90% of the other articles/reviews published in that journal in 2019, 2018 and 2017.
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Metrics Details
- Citations280
- Citation Indexes280
- 280
- Captures282
- Readers282
- 282
- Mentions1
- News Mentions1
- 1
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Automated assembly scaffolding using RagTag elevates a new tomato system for high-throughput genome editing
Michael Alonge 1, Ludivine Lebeigle 2, Melanie Kirsche 1, Katie Jenike 1, Shujun Ou 1, Sergey Aganezov 1, Xingang Wang 3, Zachary B. Lippman 3,4,
Article Description
Advancing crop genomics requires efficient genetic systems enabled by high-quality personalized genome assemblies. Here, we introduce RagTag, a toolset for automating assembly scaffolding and patching, and we establish chromosome-scale reference genomes for the widely used tomato genotype M82 along with Sweet-100, a new rapid-cycling genotype that we developed to accelerate functional genomics and genome editing in tomato. This work outlines strategies to rapidly expand genetic systems and genomic resources in other plant species.
Bibliographic Details
http://www.scopus.com/inward/record.url?partnerID=HzOxMe3b&scp=85144138173&origin=inward; http://dx.doi.org/10.1186/s13059-022-02823-7; http://www.ncbi.nlm.nih.gov/pubmed/36522651; https://genomebiology.biomedcentral.com/articles/10.1186/s13059-022-02823-7; https://dx.doi.org/10.1186/s13059-022-02823-7
Springer Science and Business Media LLC
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